From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species | BMC Genomics | Full Text
Understanding vcf-summary output - Genome Analysis Wiki
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists - O'Leary - 2018 - Molecular Ecology - Wiley Online Library
Flow chart for GBS and filtering of the C2-50 and Riesling SNP sets.... | Download Scientific Diagram
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VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
Google Code Archive - Long-term storage for Google Code Project Hosting.
Various Filter Options — VCF Filter 1.0 documentation
SNPfiltering
PPT - Next Generation Sequence Alignment & Variant Discovery on the BRC-MH Linux Cluster PowerPoint Presentation - ID:524801
VCF‐Server: A web‐based visualization tool for high‐throughput variant data mining and management - Jiang - 2019 - Molecular Genetics & Genomic Medicine - Wiley Online Library
Filtering and handling VCFs | Speciation & Population Genomics: a how-to-guide
PLOS ONE: Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens
AdmixPipe: population analyses in Admixture for non-model organisms | BMC Bioinformatics | Full Text
VIVA (VIsualization of VAriants): A VCF file visualization tool | bioRxiv
Filtering and handling VCFs | Speciation & Population Genomics: a how-to-guide
VIVA (VIsualization of VAriants): A VCF File Visualization Tool | Scientific Reports
![PDF] The variant call format and VCFtools | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/ad4fc7dbe12eaf6bf577568f3a06ec9ed4b2d0f2/2-Figure1-1.png "PDF] The variant call format and VCFtools | Semantic Scholar")
PDF] The variant call format and VCFtools | Semantic Scholar
minDP and minGQ filter · Issue #50 · vcftools/vcftools · GitHub
Workflow for inter- and intra-ramet SNP calling All 24 ramets were... | Download Scientific Diagram
Filter VCF file to randomly keep one variant/contig : r/bioinformatics
Information processing after resequencing Sequence Trimming Q 10
A short unix shell script for vcftools commands iteration to obtain the genotypes of variations for forensic purpose - Forensic Science International: Genetics Supplement Series
